LOCUS dna 7084 bp FEATURES Location/Qualifiers Promoter 1..228 /gene="RSV prom" Other Gene 1..411 /gene="RSV/5'LTR other" misc_binding 89..94 /dbxref="REBASE:SphI" Regulatory_Seq 232..326 /gene="R(HIV-LTR) reg" Regulatory_Seq 327..411 /gene="U5(HIV-LTR) reg" Regulatory_Seq 461..598 /gene="PSI(HIV) reg" misc_binding 607..612 /dbxref="REBASE:NruI" Regulatory_Seq 1086..1290 /gene="RRE(HIV) reg" misc_binding 1794..1799 /dbxref="REBASE:ClaI" Promoter 1835..2076 /gene="hU6 prom" misc_binding 2012..2017 /dbxref="REBASE:NdeI" Other Gene 2086..2106 /gene="shRNA(stem) other" Other Gene 2113..2133 /gene="shRNA(stem) other" misc_binding 2139..2144 /dbxref="REBASE:EcoRI" Regulatory_Seq 2181..2327 /gene="CTS reg" Promoter 2350..2856 /gene="PGK(Human) prom" misc_binding 2827..2832 /dbxref="REBASE:HincII" misc_binding 2859..2864 /dbxref="REBASE:BamHI" Marker 2881..3477 /gene="PuroR marker" misc_binding 3534..3539 /dbxref="REBASE:KpnI" Regulatory_Seq 3605..3657 /gene="delta_U3 reg" Other Gene 3605..3840 /gene="3'SIN-LTR(Lenti) other" Regulatory_Seq 3660..3754 /gene="R(HIV-LTR) reg" Regulatory_Seq 3755..3839 /gene="U5(HIV-LTR) reg" Regulatory_Seq 3941..3975 /gene="SV40-polyA-signal reg" Rep_Origin 4071..4148 /gene="SV40 origin" misc_binding 4112..4117 /dbxref="REBASE:NcoI" misc_binding 4151..4163 /dbxref="REBASE:SfiI" Promoter 4226..4245 /gene="T7 prom" Reporter 4253..4412 /gene="lacZ-alhpa reporter" Rep_Origin 4430..4736 /gene="f1 origin" Promoter 4919..4957 /gene="Bact prom" Marker 4999..5859 /gene="AmpR marker" Rep_Origin 6014..6633 /gene="pUC origin" Promoter 6900..7015 /gene="lac prom" Promoter 7041..7060 /gene="T3 prom" BASE COUNT 1813 a 1753 c 1867 g 1651 t 0 others ORIGIN 1 aatgtagtct tatgcaatac tcttgtagtc ttgcaacatg gtaacgatga gttagcaaca 61 tgccttacaa ggagagaaaa agcaccgtgc atgccgattg gtggaagtaa ggtggtacga 121 tcgtgcctta ttaggaaggc aacagacggg tctgacatgg attggacgaa ccactgaatt 181 gccgcattgc agagatattg tatttaagtg cctagctcga tacataaacg ggtctctctg 241 gttagaccag atctgagcct gggagctctc tggctaacta gggaacccac tgcttaagcc 301 tcaataaagc ttgccttgag tgcttcaagt agtgtgtgcc cgtctgttgt gtgactctgg 361 taactagaga tccctcagac ccttttagtc agtgtggaaa atctctagca gtggcgcccg 421 aacagggact tgaaagcgaa agggaaacca gaggagctct ctcgacgcag gactcggctt 481 gctgaagcgc gcacggcaag aggcgagggg cggcgactgg tgagtacgcc aaaaattttg 541 actagcggag gctagaagga gagagatggg tgcgagagcg tcagtattaa gcgggggaga 601 attagatcgc gatgggaaaa aattcggtta aggccagggg gaaagaaaaa atataaatta 661 aaacatatag tatgggcaag cagggagcta gaacgattcg cagttaatcc tggcctgtta 721 gaaacatcag aaggctgtag acaaatactg ggacagctac aaccatccct tcagacagga 781 tcagaagaac ttagatcatt atataataca gtagcaaccc tctattgtgt gcatcaaagg 841 atagagataa aagacaccaa ggaagcttta gacaagatag aggaagagca aaacaaaagt 901 aagaccaccg cacagcaagc ggccgctgat cttcagacct ggaggaggag atatgaggga 961 caattggaga agtgaattat ataaatataa agtagtaaaa attgaaccat taggagtagc 1021 acccaccaag gcaaagagaa gagtggtgca gagagaaaaa agagcagtgg gaataggagc 1081 tttgttcctt gggttcttgg gagcagcagg aagcactatg ggcgcagcgt caatgacgct 1141 gacggtacag gccagacaat tattgtctgg tatagtgcag cagcagaaca atttgctgag 1201 ggctattgag gcgcaacagc atctgttgca actcacagtc tggggcatca agcagctcca 1261 ggcaagaatc ctggctgtgg aaagatacct aaaggatcaa cagctcctgg ggatttgggg 1321 ttgctctgga aaactcattt gcaccactgc tgtgccttgg aatgctagtt ggagtaataa 1381 atctctggaa cagatttgga atcacacgac ctggatggag tgggacagag aaattaacaa 1441 ttacacaagc ttaatacact ccttaattga agaatcgcaa aaccagcaag aaaagaatga 1501 acaagaatta ttggaattag ataaatgggc aagtttgtgg aattggttta acataacaaa 1561 ttggctgtgg tatataaaat tattcataat gatagtagga ggcttggtag gtttaagaat 1621 agtttttgct gtactttcta tagtgaatag agttaggcag ggatattcac cattatcgtt 1681 tcagacccac ctcccaaccc cgaggggacc cgacaggccc gaaggaatag aagaagaagg 1741 tggagagaga gacagagaca gatccattcg attagtgaac ggatctcgac ggtatcgatc 1801 acgagactag cctcgagcgg ccgccccctt caccgagggc ctatttccca tgattccttc 1861 atatttgcat atacgataca aggctgttag agagataatt ggaattaatt tgactgtaaa 1921 cacaaagata ttagtacaaa atacgtgacg tagaaagtaa taatttcttg ggtagtttgc 1981 agttttaaaa ttatgtttta aaatggacta tcatatgctt accgtaactt gaaagtattt 2041 cgatttcttg gctttatata tcttgtggaa aggacgaaac accggtacaa cagccacaac 2101 gtctatctcg agatagacgt tgtggctgtt gtatttttga attctcgacc tcgagacaaa 2161 tggcagtatt catccacaat tttaaaagaa aaggggggat tggggggtac agtgcagggg 2221 aaagaatagt agacataata gcaacagaca tacaaactaa agaattacaa aaacaaatta 2281 caaaaattca aaattttcgg gtttattaca gggacagcag agatccactt tggccgcggc 2341 tcgagggggt tggggttgcg ccttttccaa ggcagccctg ggtttgcgca gggacgcggc 2401 tgctctgggc gtggttccgg gaaacgcagc ggcgccgacc ctgggtctcg cacattcttc 2461 acgtccgttc gcagcgtcac ccggatcttc gccgctaccc ttgtgggccc cccggcgacg 2521 cttcctgctc cgcccctaag tcgggaaggt tccttgcggt tcgcggcgtg ccggacgtga 2581 caaacggaag ccgcacgtct cactagtacc ctcgcagacg gacagcgcca gggagcaatg 2641 gcagcgcgcc gaccgcgatg ggctgtggcc aatagcggct gctcagcagg gcgcgccgag 2701 agcagcggcc gggaaggggc ggtgcgggag gcggggtgtg gggcggtagt gtgggccctg 2761 ttcctgcccg cgcggtgttc cgcattctgc aagcctccgg agcgcacgtc ggcagtcggc 2821 tccctcgttg accgaatcac cgacctctct ccccaggggg atccaccgga gcttaccatg 2881 accgagtaca agcccacggt gcgcctcgcc acccgcgacg acgtccccag ggccgtacgc 2941 accctcgccg ccgcgttcgc cgactacccc gccacgcgcc acaccgtcga tccggaccgc 3001 cacatcgagc gggtcaccga gctgcaagaa ctcttcctca cgcgcgtcgg gctcgacatc 3061 ggcaaggtgt gggtcgcgga cgacggcgcc gcggtggcgg tctggaccac gccggagagc 3121 gtcgaagcgg gggcggtgtt cgccgagatc ggcccgcgca tggccgagtt gagcggttcc 3181 cggctggccg cgcagcaaca gatggaaggc ctcctggcgc cgcaccggcc caaggagccc 3241 gcgtggttcc tggccaccgt cggcgtctcg cccgaccacc agggcaaggg tctgggcagc 3301 gccgtcgtgc tccccggagt ggaggcggcc gagcgcgccg gggtgcccgc cttcctggag 3361 acctccgcgc cccgcaacct ccccttctac gagcggctcg gcttcaccgt caccgccgac 3421 gtcgaggtgc ccgaaggacc gcgcacctgg tgcatgaccc gcaagcccgg tgcctgacgc 3481 ccgccccacg acccgcagcg cccgaccgaa aggagcgcac gaccccatgc atcggtacct 3541 ttaagaccaa tgacttacaa ggcagctgta gatcttagcc actttttaaa agaaaagggg 3601 ggactggaag ggctaattca ctcccaacga agacaagatc tgctttttgc ttgtactggg 3661 tctctctggt tagaccagat ctgagcctgg gagctctctg gctaactagg gaacccactg 3721 cttaagcctc aataaagctt gccttgagtg cttcaagtag tgtgtgcccg tctgttgtgt 3781 gactctggta actagagatc cctcagaccc ttttagtcag tgtggaaaat ctctagcagt 3841 agtagttcat gtcatcttat tattcagtat ttataacttg caaagaaatg aatatcagag 3901 agtgagagga acttgtttat tgcagcttat aatggttaca aataaagcaa tagcatcaca 3961 aatttcacaa ataaagcatt tttttcactg cattctagtt gtggtttgtc caaactcatc 4021 aatgtatctt atcatgtctg gctctagcta tcccgcccct aactccgccc atcccgcccc 4081 taactccgcc cagttccgcc cattctccgc cccatggctg actaattttt tttatttatg 4141 cagaggccga ggccgcctcg gcctctgagc tattccagaa gtagtgagga ggcttttttg 4201 gaggcctagg gacgtaccca attcgcccta tagtgagtcg tattacgcgc gctcactggc 4261 cgtcgtttta caacgtcgtg actgggaaaa ccctggcgtt acccaactta atcgccttgc 4321 agcacatccc cctttcgcca gctggcgtaa tagcgaagag gcccgcaccg atcgcccttc 4381 ccaacagttg cgcagcctga atggcgaatg ggacgcgccc tgtagcggcg cattaagcgc 4441 ggcgggtgtg gtggttacgc gcagcgtgac cgctacactt gccagcgccc tagcgcccgc 4501 tcctttcgct ttcttccctt cctttctcgc cacgttcgcc ggctttcccc gtcaagctct 4561 aaatcggggg ctccctttag ggttccgatt tagtgcttta cggcacctcg accccaaaaa 4621 acttgattag ggtgatggtt cacgtagtgg gccatcgccc tgatagacgg tttttcgccc 4681 tttgacgttg gagtccacgt tctttaatag tggactcttg ttccaaactg gaacaacact 4741 caaccctatc tcggtctatt cttttgattt ataagggatt ttgccgattt cggcctattg 4801 gttaaaaaat gagctgattt aacaaaaatt taacgcgaat tttaacaaaa tattaacgct 4861 tacaatttag gtggcacttt tcggggaaat gtgcgcggaa cccctatttg tttatttttc 4921 taaatacatt caaatatgta tccgctcatg agacaataac cctgataaat gcttcaataa 4981 tattgaaaaa ggaagagtat gagtattcaa catttccgtg tcgcccttat tccctttttt 5041 gcggcatttt gccttcctgt ttttgctcac ccagaaacgc tggtgaaagt aaaagatgct 5101 gaagatcagt tgggtgcacg agtgggttac atcgaactgg atctcaacag cggtaagatc 5161 cttgagagtt ttcgccccga agaacgtttt ccaatgatga gcacttttaa agttctgcta 5221 tgtggcgcgg tattatcccg tattgacgcc gggcaagagc aactcggtcg ccgcatacac 5281 tattctcaga atgacttggt tgagtactca ccagtcacag aaaagcatct tacggatggc 5341 atgacagtaa gagaattatg cagtgctgcc ataaccatga gtgataacac tgcggccaac 5401 ttacttctga caacgatcgg aggaccgaag gagctaaccg cttttttgca caacatgggg 5461 gatcatgtaa ctcgccttga tcgttgggaa ccggagctga atgaagccat accaaacgac 5521 gagcgtgaca ccacgatgcc tgtagcaatg gcaacaacgt tgcgcaaact attaactggc 5581 gaactactta ctctagcttc ccggcaacaa ttaatagact ggatggaggc ggataaagtt 5641 gcaggaccac ttctgcgctc ggcccttccg gctggctggt ttattgctga taaatctgga 5701 gccggtgagc gtgggtctcg cggtatcatt gcagcactgg ggccagatgg taagccctcc 5761 cgtatcgtag ttatctacac gacggggagt caggcaacta tggatgaacg aaatagacag 5821 atcgctgaga taggtgcctc actgattaag cattggtaac tgtcagacca agtttactca 5881 tatatacttt agattgattt aaaacttcat ttttaattta aaaggatcta ggtgaagatc 5941 ctttttgata atctcatgac caaaatccct taacgtgagt tttcgttcca ctgagcgtca 6001 gaccccgtag aaaagatcaa aggatcttct tgagatcctt tttttctgcg cgtaatctgc 6061 tgcttgcaaa caaaaaaacc accgctacca gcggtggttt gtttgccgga tcaagagcta 6121 ccaactcttt ttccgaaggt aactggcttc agcagagcgc agataccaaa tactgttctt 6181 ctagtgtagc cgtagttagg ccaccacttc aagaactctg tagcaccgcc tacatacctc 6241 gctctgctaa tcctgttacc agtggctgct gccagtggcg ataagtcgtg tcttaccggg 6301 ttggactcaa gacgatagtt accggataag gcgcagcggt cgggctgaac ggggggttcg 6361 tgcacacagc ccagcttgga gcgaacgacc tacaccgaac tgagatacct acagcgtgag 6421 ctatgagaaa gcgccacgct tcccgaaggg agaaaggcgg acaggtatcc ggtaagcggc 6481 agggtcggaa caggagagcg cacgagggag cttccagggg gaaacgcctg gtatctttat 6541 agtcctgtcg ggtttcgcca cctctgactt gagcgtcgat ttttgtgatg ctcgtcaggg 6601 gggcggagcc tatggaaaaa cgccagcaac gcggcctttt tacggttcct ggccttttgc 6661 tggccttttg ctcacatgtt ctttcctgcg ttatcccctg attctgtgga taaccgtatt 6721 accgcctttg agtgagctga taccgctcgc cgcagccgaa cgaccgagcg cagcgagtca 6781 gtgagcgagg aagcggaaga gcgcccaata cgcaaaccgc ctctccccgc gcgttggccg 6841 attcattaat gcagctggca cgacaggttt cccgactgga aagcgggcag tgagcgcaac 6901 gcaattaatg tgagttagct cactcattag gcaccccagg ctttacactt tatgcttccg 6961 gctcgtatgt tgtgtggaat tgtgagcgga taacaatttc acacaggaaa cagctatgac 7021 catgattacg ccaagcgcgc aattaaccct cactaaaggg aacaaaagct ggagctgcaa 7081 gctt //