- Dharmacon Screening libraries
- Human Accell 2.0 siRNA Libraries
Human Accell 2.0 siRNA Libraries
Accell 2.0 siRNA libraries are designed to support high-throughput functional gene perturbation in difficult-to-transfect cells.
Using Accell self-delivery chemistry, these libraries enable siRNA screening without transfection reagents, viral vectors, or electroporation, helping streamline workflows in cell types that are often challenging to manipulate.
These siRNA libraries are available in collections spanning the human drug targets and key gene families; and are available in siRNA SMARTpools and set of four individual siRNA formats.
Accell™ 2.0 siRNA Libraries
Accell 2.0 siRNA libraries represent the next generation of self-delivering RNAi reagents, designed for effective gene silencing in difficult-to-transfect cell types without the need for transfection reagents. Sequences are realigned and redesigned against the latest reference transcriptome, supported by over two decades of siRNA bioinformatic design and RNA chemical synthesis expertise, to support transcriptomic coverage, and target specific gene knockdown across diverse cell types and screening applications.
Collections span drug targets and commonly studied gene families, enabling interrogation of hundreds to thousands of genes in both focused and broad discovery screens. Available in 96- or 384-well formats with a choice of siRNA pools or individual unique designs, these libraries support diverse screening workflows and are compatible with single-well analytical techniques including high content imaging, morphological profiling, reporter-based assays, and high-throughput transcriptomics.
Highlights
- Next-generation transcriptome alignment and redesign: Accell 2.0 siRNAs are re-annotated and redesigned according to the latest reference transcriptome for improved specificity, with curation to maximize isoform coverage and account for updated genomic coordinates and newly annotated genes.
- Recommended for neuronal, suspension, primary, and other difficult-to-transfect cell types.
- Proprietary sense strand chemical modification strategy promotes selective antisense/active strand loading into the RISC to reduce off-target effects and facilitates cellular internalization without the need for transfection reagents.
- Nuclease resistance modifications protect siRNA integrity in biological environments, supporting sustained gene silencing activity.
- Extended-duration knockdown with optimized continuous application.
- Available as SMARTpool reagents to minimize seed-mediated off-target signatures while maintaining on-target knockdown.
- Available in 96- or 384-well plate formats; Echo® Qualified 384-Well plates available upon request.
- Plates include space for control reagent inclusion.
- Available as cherry-pick libraries for custom gene selection and hit follow-up.
Experimental Considerations
- Accell siRNA works at a higher concentration than conventional siRNA; recommended 1 µM working concentration
- Delivery may be inhibited by the presence of BSA in serum. Optimization studies with serum-free media formulations (Accell Delivery Media) or < 2.5% serum in standard media is recommended
- Full-serum media can be added back after 48 hours of incubation. Optimal mRNA silencing is typically achieved by 72 hours or up to 96 hours for protein knockdown
Learn more about Accell 2.0 siRNA design features and benefits on the Accell 2.0 siRNA product page
Available pre-defined collections and approximate gene counts: (table will be filled when we have the gene-count information)
| Human Accell 2.0 siRNA libraries | Approximate number of genes |
|---|---|
| GPCRs | 470 |
| Ion Channels | 420 |
| Phosphatases | 310 |
| Proteases | 670 |
| Protein Kinases | 760 |
| Ubiquitin Enzymes | 750 |
| Transcription Factors | 1,560 |
| Drug Targets | 3,370 |
| Ubiquitin Conjugation Subset 1 | 90 |
| Ubiquitin Conjugation Subset 2 | 110 |
| Ubiquitin Conjugation Subset 3 | 390 |
| Apoptosis | 550 |
| Cell Cycle Regulation | 170 |
| Cytokine Receptors | 140 |
| Deubiquitinating Enzymes | 100 |
| DNA Damage Response | 240 |
| Epigenetics | 810 |
| Membrane Trafficking | 140 |
| Nuclear Receptors | 50 |
| Tyrosine Kinases | 90 |
Please note, the whole genome library contains the Druggable Genome collection which contains 8 discrete sub-collections (light blue), and all remaining protein coding genes annotated in the relevant reference genome.
Our siRNA knockdown guarantee
Accell 2.0 siRNA reagents (SMARTpool siRNA and three out of four individual siRNAs) are guaranteed to silence target gene expression by at least 75% at the mRNA level compared to non-targeting controls as measured by qPCR when demonstrated to have been used under optimal delivery conditions (confirmed using functionally validated positive control and measured at 24 to 72 hours after transfection using 1µM siRNA).
Gene perturbation in screening: Accell 2.0 siRNA reagents are guaranteed to knock down under optimal conditions; in a screening setting target knockdown is subject to the experimental approach. This includes factors such as the model system appropriately expressing the target mRNA, optimization of siRNA delivery and timing of delivery across various experimental conditions, and appropriate analytical endpoints. It can be challenging to de-convolute multiple contributing variables for a negative hit (no knockdown); and ultimately different targets may require different conditions. The Dharmacon reagents team is here to support your scientific efforts and is happy to consult on negative hit follow-up to try and determine conditions that may improve results for individual targets.
Please reach out to our Scientific Support team for any questions or guidance on optimizing the use of your siRNA products.
Complete your gene silencing experiment by adding these supporting reagents to your order.
Accell 2.0 siRNA Controls
Validated positive and non-targeting negative controls designed for use with next-generation Accell 2.0 siRNAs. Featuring proprietary Accell chemical modifications supporting self-delivery, nuclease resistance, and reduced off-target effects. Available as pooled or individual siRNAs.
Accell 2.0 controls are recommended for any self-delivering siRNA workflow in difficult-to-transfect cell types including neuronal, suspension, and primary cells. Pooled siRNA controls are recommended when additional off-target reduction is desired and are ideal for use alongside Accell 2.0 SMARTpool reagents. Select species-specific positive controls targeting robustly expressed housekeeping genes to confirm reagent function within your experimental system.
Accell 2.0 Control Kits
Accell 2.0 Control Kits provide species-specific fluorescent and unlabeled positive and negative controls to support optimization of siRNA delivery conditions in difficult-to-transfect cells. Designed to assess the performance of next-generation Accell 2.0 chemistry in neuronal, suspension, primary, and other hard-to-transfect cell types, these kits provide a streamlined solution for assay setup and experimental validation.
Select relevant positive controls to efficiently silence a highly expressed housekeeping gene in your experimental system for confidence in your results.
| Accell 2.0 Positive Control Reagents | Species | Catalog Number |
|---|---|---|
| Accell 2.0 Cyclophilin B Control siRNA | Human, Mouse, Rat | D2-001920-0Y |
| Accell 2.0 Cyclophilin B Control siRNA Pool | Human, Mouse, Rat | D2-001920-Y0 |
| Accell 2.0 GAPD Control siRNA | Human, Mouse | D2-001930-0Y |
| Accell 2.0 GAPD Control siRNA Pool | Human, Mouse | D2-001930-Y0 |
| Accell 2.0 Green Cyclophilin B Control siRNA | Human, Mouse, Rat | D2-001970-0Y |
| Accell 2.0 Red Cyclophilin B Control siRNA | Human, Mouse, Rat | D2-001975-0Y |
| Accel 2.0 eGFP Control siRNA | N/A | D2-001940-01 |
| Accell 2.0 eGFP Control siRNA Pool | N/A | D2-001940-10 |
| Accell 2.0 Negative Control Reagents | Species | Catalog Number |
| Accell 2.0 Non-targeting siRNAs | Human, Mouse, Rat | D2-001910-0X |
| Accell 2.0 Non-targeting siRNA Pool | Human, Mouse, Rat | D2-001910-10 |
| Accell 2.0 Green Non-targeting siRNA | Human, Mouse, Rat | D2-001950-01 |
| Accell 2.0 Red Non-targeting siRNA | Human, Mouse, Rat | D2-001960-01 |
| Accell 2.0 Control siRNA Kits | Species | Catalog Number |
| Accell 2.0 Control siRNA Kits (Green) | Human, Mouse | K2-005000-G1-0Y |
| Accell 2.0 Control siRNA Kits (Red) | Human, Mouse | K2-005000-R1-0Y |
| Peer-reviewed publications demonstrate effective silencing in numerous cell types | |
|---|---|
| Human Suspension Cell Lines | BDCM, IM-9, Jurkat, K662, THP-1, Jeko-1 and Mino MCL |
| Human Adherent Cell Lines | A-375, ARPE-19, CaCo-2, CG4, DLD-1, DU-145, EC52, GTM-3, MR32, LAN5, LNCaP, MIA PaCa-2, NCI/ADR-RES, OVCAR-3, OVCA-420, PGA1, PNT2, SH-SY5Y, SK-N-BE and SK-N-SH neuroblastoma, SK-BR3, SKOV3, TE15, U251, U87MG, U937 |
| Mouse Adherent Cell Lines | ES-D3, H9c2, LbT2, LNK, mouse oviduct epithelial cells, mProx24, PC-12 |
| Human Differentiated Stem Cells | Adipocytes and osteoblasts from hMSC |
| Human Primary Cells | HUVEC, HUASMC, hMSC, PBMC, astrocytes, hypothalamic neurons, T cells, NK cells, macrophages, immortalized B cells, esthesioneuroblastoma cells, hepatocytes, bronchial smooth muscle cells |
| Mouse and Rat Primary Cells | Cortical neurons, hippocampal neurons, striatal neurons, Naïve CD4+ T cells, LN T cells, D1 T cells, RAW264.7 macrophages, hepatocytes, neonatal ventricular cardiomyocytes, fibroblasts derived from genetically-modified mice, bone marrow-derived DC, NOD CD4+ CD25- splenic cells, NOD BMMs, VSMCs, somatolactotroph GH3, McArdle 7777 cells (hepatoma cell line), osteoclast precursors, calvarial (cranial) organ, pituitary cell types derived from primary tumors |
| In vivo Animal Applications | Please contact Scientific Support for guidance |
Application of Accell 2.0 siRNA simplifies targeted gene knockdown

- Combine Accell 2.0 siRNA with Accell siRNA delivery media (or other reduced serum media).
- Add Accell 2.0 delivery mix directly to cells and incubate for 72 hours.
Figure created in with BiorRender.com
Accell 2.0 siRNA maintains performance of gene target knockdown set by Accell siRNA in neurons derived from induced WTC-11 iPSC cells
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Characterization of target mRNA knockdown by Accell and Accell 2.0 siRNAs in cultured neurons. Data are shown relative to neurons treated with non-targeting control (NTC) siRNA. Experimental schematic (A) and relative gene expression in WTC-11-derived neurons (B). Neurons derived from WTC-11 iPSCs were cultured in differentiation medium for 14 days, with daily medium replenishment. On day 14, 50 µL of medium was removed and replaced with 50 µL fresh medium containing 2 µM Accell or Accell 2.0 pooled siRNA designs (4 siRNA designs at 0.5 µM each) or 2 µM Accell PPIB control (Cat# D-001920-01), resulting in a final siRNA concentration of 1 µM in all conditions. An identical concentration of Accell Non-targeting Control siRNA #1 (D-001910-01) was used for each target NTC condition. siRNA mixtures were replenished by half-medium change on differentiation days 16 and 18, for a total of three siRNA additions. Total RNA was extracted on differentiation day 20 for downstream processing. Figure A is created with BioRender.com.
Performance of target mRNA knockdown in matrix-free 3D spheroids is maintained with Accell 2.0 siRNA

Characterization of Accell and Accell 2.0 siRNA-mediated mRNA knockdown in ECM-free HCT-116 spheroids. Control, PTEN (A), and PPP2R1B (B) mRNA expression were quantified in HCT-116 spheroids after 144 hours of siRNA treatment. (C) Dosing timeline for Accell 2.0 siRNA delivery. Spheroids were generated by seeding 3,000 HCT-116 cells into ECM-free, 96-well ultralow attachment round-bottom plates in HCT-116 medium (McCoy’s 5A medium supplemented with 10% FBS and 2 mM L-glutamine). After two days, 50% of the medium was removed and replaced with 2 µM Accell or Accell 2.0 single or pooled siRNA designs (4 siRNAs at 0.5 µM each) for a final concentration of 1 µM siRNA. Matching concentrations of Accell Non-targeting Control siRNA #1 (D-001910-01) or Accell PPIB control siRNA (D-001920-01) were added on the same schedule. After three rounds of siRNA replenishment, spheroids were lysed, total nucleic acid was collected, and RT-qPCR was used to measure target mRNA abundance. Data are shown relative to target expression in spheroids treated with non-targeting control siRNA. Figure C is created with BioRender.com.
Target protein knockdown in matrix-free 3D spheroids using Accell 2.0 siRNA

Characterization of Accell siRNA-mediated cyclophilin B (PPIB) target protein knockdown in ECM-free HCT-116 spheroids. Data are presented relative to expression in spheroids treated with non-targeting control (NTC) siRNA. (A) Western blot and (B) quantification of Cyclophilin B protein expression in HCT-116 spheroids determined from (A) after 144-h siRNA treatment. Each lane is representative of an independent pool of spheroids (N=3). (C) Immunocytochemistry images of serially sectioned HCT-116 spheroids after 144-h siRNA treatment with an Accell PPIB Control Pool or NTC Pool. Spheroids were then collected, fixed in 2% paraformaldehyde, embedded in optimal cutting (O.C.T.) temperature compound, flash frozen, and serially sectioned. Material was incubated with 1:200 dilution of primary antibody against PPIB (anti-cyclophilin B, Abcam ab16045) and secondary incubation with 1:500 dilution of Alexa 488-conjugated Goat-anti-rabbit antibody (Invitrogen A11034) and 1:1000 dilution of Hoechst 33342 (Molecular Probes H-3570). Scale bar = 200 µM.
Accell control siRNA demonstrates effective uptake and silencing in organotypic brain slices
Accell siRNA shows increased uptake with extended incubation. 250 µM cerebellar sections were prepared, cultured, and incubated for 3 hours (A) and 72 hours (B) with Accell Red Non-targeting control (NTC) siRNA (Cat# D-001960-01-05) before inspection by microscopy.
Robust gene target knockdown in primary lung fibroblasts using Accell 2.0 siRNA

The Dharmacon Reagents team has a suite of webtools for product configuration and calculators to make your experiments easier. View some of our screener-friendly calculators below to determine quantities of siRNA or volumes of DharmaFECT transfection reagent required for your experiments:
Reagent calculators for screening:
View our Ordering and calculation tools webpage for all of our convenient webtools and calculators.
Click to view a more comprehensive list of Accell siRNA citations.
- S. Suzuki et al., Differential Roles of Epac in Regulating Cell Death in Neuronal and Myocardial Cells. J. Biol. Chem. 285, 24248-24259 (July 2010). [primary mouse cortical neurons (E15-17)]
- U. Dreses-Werringloer et al., A Polymorphism in CALHM1 Influences Ca2+ Homeostasis, Ab Levels, and Alzheimer’s Disease Risk. Cell. 133, 1149-1161 (27 June 2008). [SHSY-5Y; human neuroblastoma]
- S. Byas et al., Human Embryonic Stem Cells Maintain Pluripotency after E-Cadherin Expression Knockdown. FASEB J. 24, lb172 (Apr 2010). [H9 stem cell lines]
- V. Saini et al, CXC Chemokine Receptor 4 Is a Cell Surface Receptor for Extracellular Ubiquitin. J. Biol. Chem. 285, 15566-15576 (May 2010). [THP-1 monocytes]
- D. Smirnov et al., Genetic Analysis of Radiation-induced Changes in Human Gene Expression. Nature. 459, 10.1038/nature07940(28 May 2009). [immortalized B cells]
Application notes
Product data
Product inserts
Protocols
Safety data sheets
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