OncoSpan is a well-characterised, cell line-derived Reference Standard containing over 375 variants across 152 key cancer genes. This includes 236 variants with a COSMIC ID and more than 27 INDELs (>21 deletions and 6 insertions, ranging from 1-15 base pairs). Variants are present between 1-100% allelic frequency (AF), with 47 variants present at ≤ 20% AF for LOD determination of your assay. Every batch of OncoSpan cfDNA has 25 variants confirmed by ddPCR, in addition to being fully exome sequenced by GATC-Eurofins at 120x coverage using Agilent SureSelect Human All Exon V6 kit and Illumina sequencing to ISO 17025. This provides you with an accurate and reliable truth set for comparison to your assay’s performance. You will receive a password upon ordering to download the aligned and de-duplicated NGS data for your batch (BAM, BED and VCF-formatted files) via our File Transfer Protocol (FTP) portal.  Alternatively, for your convenience we have also listed the 386 high confidence variants in an easy-to-access excel document that can be downloaded.

Technical Data

Format
Cell-free DNA

Genes Covered

ABL1, AKT1, AKT2, ALK, APC, AR, ARID1A, ATR, ATRX, AXL, BARD1, BCL6, BLM, BMPR1A, BRAF, BRCA1, BRCA2, BTK, BUB1B, CARD11, CCND1, CCND3, CCNE1, CD79B, CDH1, CDK12, CDK4, CEP57, CFH, CREBBP, CSF1R, CTNNB1, DDR2, DIS3L2, DNMT3A, EGFR, EML4, EP300, EPCAM, ERBB2, ERBB3, ERCC1, ERCC2, ERCC4, ERCC5, ERG, ETS1, ETV4, EWSR1, EXT1, FANCA, FANCD2, FANCE, FANCG, FANCI, FANCM, FBXW7, FGF10, FGF2, FGF3, FGF6, FGFR1, FGFR3, FLCN, FLI1, FLT1, FLT3, FZR1, GATA2, GATA3, GEN1, GNA11, GNAS, HNF1A, HRAS, IDH1, IDH2, JAK1, JAK2, JAK3, KDR, KIT, KRAS, LDLR, MAGI1, MAP2K1, MAP2K2, MAX, MDM4, MED12, MET, MLH1, MLLT3, MMAB, MRE11, MSH2, MSH3, MSH6, MTOR, NBN, NF1, NFE2L2, NOTCH1, NOTCH2, NOTCH3, NRAS, NRG1, NTRK1, NTRK3, PDGFRA, PDGFRB, PIK3CA, PIK3CD, PIK3CG, PIK3R1, PMS2, PPARG, PPP2R2A, PRKAR1A, PROC, PTCH1, PTPN11, RAD51B, RAD54L, RAF1, RB1, RBM45, RECQL4, RET, RHBDF2, ROS1, RPS6KB1, SDHB, SF3B1, SF3B2, SLTM, SLX4, SMARCB1, SMO, SMOX, STK11, TERT, TET2, TFRC, TP53, TP53BP1, TSC1, TSC2, WRN, XPA, XPC, ZNF395

Cosmics

249

Allelic Frequencies

1% - 92.5% for ddPCR-verified variants

Buffer

Tris-EDTA (10mM Tris-HCl, 1mM EDTA), pH 8.0

Product Information

Verified Mutations

Unit Size

350ng

Concentration

20ng/µl

General Information

Storage

4˚C

Expiry

See all product shelf life information

Quality Control

Allelic Frequency

Droplet Digital PCR™

Genotype

Next Generation Sequencing

Quality

Tapestation

Quantification

Qubit dsDNA BR Assay (post-fragmentation)